Variant report

Variant	rs7431124
Chromosome Location	chr3:18028571-18028572
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:18026849..18028715-chr3:18032122..18033641,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1367521	0.89[ASN][1000 genomes]
rs2337386	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4128378	0.89[ASN][1000 genomes]
rs4908954	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4908955	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4909001	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4909005	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6577608	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6784436	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6793262	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap]
rs6807199	0.93[ASN][1000 genomes]
rs7374020	0.89[ASN][1000 genomes]
rs7428364	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7430739	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7432256	0.88[ASW][hapmap];0.81[CEU][hapmap];0.87[GIH][hapmap];0.84[LWK][hapmap];0.83[MEX][hapmap];0.85[TSI][hapmap];0.89[YRI][hapmap];0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7611417	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7627212	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7641293	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7644630	0.81[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7646613	0.85[AMR][1000 genomes]
rs7649870	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9310539	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9833830	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9878816	0.81[CEU][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9880185	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1807571	chr3:18017246-18057347	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7431124	C3orf20	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:18019200-18031200	Enhancers	Primary hematopoietic stem cells	blood
2	chr3:18022400-18029600	Enhancers	Thymus	Thymus
3	chr3:18025400-18032800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:18025600-18029800	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr3:18027200-18029400	Enhancers	Colon Smooth Muscle	Colon
6	chr3:18027400-18029000	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr3:18027600-18028600	Enhancers	Dnd41	blood
8	chr3:18027600-18029600	Enhancers	Fetal Thymus	thymus
9	chr3:18027800-18029000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr3:18027800-18029200	Enhancers	Fetal Stomach	stomach
11	chr3:18028000-18028800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr3:18028000-18031400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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