Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1367521	0.86[ASN][1000 genomes]
rs4128378	0.86[ASN][1000 genomes]
rs4908954	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4908955	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4909001	0.86[ASN][1000 genomes]
rs4909005	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6577608	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6784436	0.82[AMR][1000 genomes]
rs6807199	0.90[ASN][1000 genomes]
rs7374020	0.86[ASN][1000 genomes]
rs7428364	0.86[ASN][1000 genomes]
rs7430739	0.96[ASN][1000 genomes]
rs7431124	0.88[ASW][hapmap];0.81[CEU][hapmap];0.87[GIH][hapmap];0.84[LWK][hapmap];0.83[MEX][hapmap];0.85[TSI][hapmap];0.89[YRI][hapmap];0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7611417	0.86[ASN][1000 genomes]
rs7627212	0.86[ASN][1000 genomes]
rs7641293	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7644630	0.84[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7646613	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7649870	0.80[ASN][1000 genomes]
rs9310539	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9833830	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9878816	0.96[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1807571	chr3:18017246-18057347	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7432256	C3orf20	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:18025400-18032800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr3:18028000-18031400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr3:18029200-18032600	Enhancers	Dnd41	blood
4	chr3:18029600-18035800	Weak transcription	Fetal Thymus	thymus
5	chr3:18029600-18037400	Weak transcription	Thymus	Thymus
6	chr3:18029800-18035000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr3:18031200-18032000	Weak transcription	Primary hematopoietic stem cells	blood

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