Variant report

Variant	rs9310539
Chromosome Location	chr3:18058059-18058060
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs4908954	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4908955	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4909001	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6577608	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6784436	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7428364	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7430739	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7431124	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7432256	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7611417	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7627212	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7641293	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7644630	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7646613	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7649870	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9833830	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9878816	0.81[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:18046200-18076600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:18054800-18058400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr3:18055000-18088000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr3:18055600-18060600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr3:18056800-18059800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:18057400-18058400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
7	chr3:18057600-18059800	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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