Variant report

Variant	rs4908955
Chromosome Location	chr3:18046487-18046488
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs4908954	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4909001	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4909005	0.92[EUR][1000 genomes]
rs6577608	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6784436	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7428364	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7430739	0.80[AMR][1000 genomes]
rs7431124	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7432256	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7611417	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7627212	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7641293	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7644630	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7646613	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7649870	0.87[ASN][1000 genomes]
rs9310539	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9833830	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9878816	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1807571	chr3:18017246-18057347	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:18043600-18046800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr3:18046200-18076600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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