Variant report

Variant	rs4128378
Chromosome Location	chr3:17989553-17989554
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1025392	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1367521	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1430884	0.85[EUR][1000 genomes]
rs1430887	0.87[EUR][1000 genomes]
rs1430891	0.86[EUR][1000 genomes]
rs1529599	0.89[EUR][1000 genomes]
rs1864591	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2116097	0.85[EUR][1000 genomes]
rs2337385	0.87[EUR][1000 genomes]
rs2337386	1.00[CHB][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4908944	0.87[EUR][1000 genomes]
rs4908989	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4909005	0.86[ASN][1000 genomes]
rs6577601	0.87[EUR][1000 genomes]
rs6577604	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6577608	0.86[ASN][1000 genomes]
rs6784611	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6793262	0.83[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6804191	0.85[EUR][1000 genomes]
rs6807199	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs736262	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7374020	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7427760	0.80[AFR][1000 genomes]
rs7430739	0.89[ASN][1000 genomes]
rs7431124	0.80[CEU][hapmap];1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs7432256	0.86[ASN][1000 genomes]
rs7616329	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7644630	0.86[ASN][1000 genomes]
rs9814726	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9878816	0.86[ASN][1000 genomes]
rs9880185	1.00[CHB][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17986000-17989600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:17986000-17989600	Enhancers	Dnd41	blood
3	chr3:17986400-17990600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr3:17986400-17991400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr3:17986600-17991400	Enhancers	Primary hematopoietic stem cells	blood
6	chr3:17987600-17990600	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr3:17987600-17990600	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr3:17987600-17996200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:17988400-17990400	Weak transcription	Fetal Thymus	thymus
10	chr3:17989000-17989600	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr3:17989000-17990200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr3:17989000-17992200	Weak transcription	Fetal Heart	heart
13	chr3:17989400-17989600	Enhancers	Duodenum Mucosa	Duodenum
14	chr3:17989400-17989800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:17989400-17992800	Weak transcription	Thymus	Thymus

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