Variant report

Variant	rs9814726
Chromosome Location	chr3:17953353-17953354
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17949151..17952704-chr3:17953108..17957303,4	K562	blood:
2	chr3:17951736..17954313-chr3:17965392..17967351,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1025392	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1346885	0.81[AMR][1000 genomes]
rs1346886	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs1367521	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1430884	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1430887	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1430891	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1529599	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1864591	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2116097	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2337385	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2337386	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4128378	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4908944	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4908989	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6577601	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6784611	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6793262	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6804191	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6807199	0.81[EUR][1000 genomes]
rs736262	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7374020	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7616329	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9880185	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17942800-17953800	Enhancers	Dnd41	blood
2	chr3:17944800-17953600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr3:17946400-17953800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:17950200-17953800	Enhancers	Primary hematopoietic stem cells	blood
5	chr3:17950600-17953800	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr3:17950600-17959600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:17951000-17953800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr3:17951400-17953800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr3:17951600-17953800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr3:17952200-17954400	Enhancers	Primary B cells from peripheral blood	blood
11	chr3:17952200-17956400	Enhancers	Fetal Thymus	thymus
12	chr3:17952600-17953800	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr3:17952800-17955400	Enhancers	Primary B cells from cord blood	blood
14	chr3:17953200-17953800	Weak transcription	Thymus	Thymus

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