Variant report

Variant	rs2337385
Chromosome Location	chr3:17943600-17943601
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17938846..17941461-chr3:17943244..17945275,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1025392	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1346886	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs1367521	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1430884	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1430887	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1430891	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1529599	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1594432	0.88[ASN][1000 genomes]
rs1864591	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2116097	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2337386	0.89[CEU][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4128378	0.87[EUR][1000 genomes]
rs4908944	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4908989	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6577601	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6784611	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6793262	0.92[CEU][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6804191	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6807199	0.81[EUR][1000 genomes]
rs736262	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7374020	0.86[EUR][1000 genomes]
rs7616329	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9814726	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9880185	0.89[CEU][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17936800-17950200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:17942800-17953800	Enhancers	Dnd41	blood
3	chr3:17943000-17943800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr3:17943000-17943800	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr3:17943000-17944200	Enhancers	Primary B cells from peripheral blood	blood
6	chr3:17943000-17944200	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr3:17943000-17944400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr3:17943000-17945600	Enhancers	Primary hematopoietic stem cells	blood
9	chr3:17943200-17943600	Enhancers	Fetal Heart	heart
10	chr3:17943200-17944000	Enhancers	Primary B cells from cord blood	blood
11	chr3:17943200-17944000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr3:17943200-17944200	Enhancers	GM12878-XiMat	blood
13	chr3:17943200-17947400	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr3:17943400-17944000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr3:17943400-17947000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr3:17943600-17945600	Weak transcription	Fetal Heart	heart

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