Variant report

Variant	rs7374020
Chromosome Location	chr3:17999328-17999329
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17998579..18001234-chr3:18005197..18006919,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1025392	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1367521	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1430884	0.83[EUR][1000 genomes]
rs1430887	0.86[EUR][1000 genomes]
rs1430891	0.85[EUR][1000 genomes]
rs1529599	0.87[EUR][1000 genomes]
rs1864591	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2116097	0.84[EUR][1000 genomes]
rs2337385	0.86[EUR][1000 genomes]
rs2337386	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4128378	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4908944	0.86[EUR][1000 genomes]
rs4908989	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4909005	0.86[ASN][1000 genomes]
rs6577601	0.85[EUR][1000 genomes]
rs6577604	0.80[EUR][1000 genomes]
rs6577608	0.86[ASN][1000 genomes]
rs6784611	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6793262	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6804191	0.83[EUR][1000 genomes]
rs6807199	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs736262	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7430739	0.89[ASN][1000 genomes]
rs7431124	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7432256	0.82[CEU][hapmap];0.86[ASN][1000 genomes]
rs7616329	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7644630	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs9814726	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9878816	0.82[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs9880185	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7374020	C3orf20	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17993400-18004400	Weak transcription	Thymus	Thymus
2	chr3:17997200-18003400	Weak transcription	Dnd41	blood

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