Variant report

Variant	rs1370464
Chromosome Location	chr11:16257020-16257021
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16253958..16256004-chr11:16256326..16259109,2	K562	blood:
2	chr11:16256169..16258785-chr11:16346996..16349123,2	K562	blood:
3	chr11:16254762..16258115-chr11:16260794..16264082,4	K562	blood:
4	chr11:16248287..16249803-chr11:16256816..16258558,2	K562	blood:
5	chr11:16252253..16255458-chr11:16256326..16259202,3	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10734239	0.81[YRI][hapmap]
rs10734240	0.90[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10741692	1.00[EUR][1000 genomes]
rs10741693	0.85[YRI][hapmap];0.82[AFR][1000 genomes]
rs10766307	1.00[EUR][1000 genomes]
rs10766312	0.86[YRI][hapmap];0.82[AFR][1000 genomes]
rs10766313	0.89[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10766314	0.80[YRI][hapmap]
rs10766315	0.81[YRI][hapmap]
rs10832576	0.80[YRI][hapmap]
rs10832579	0.81[YRI][hapmap]
rs10832584	0.80[YRI][hapmap]
rs11023890	0.80[YRI][hapmap]
rs1155685	0.81[YRI][hapmap]
rs1156725	0.85[YRI][hapmap]
rs1356646	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1519122	0.81[YRI][hapmap]
rs1595373	0.86[YRI][hapmap]
rs1595374	0.81[YRI][hapmap]
rs1607479	0.90[YRI][hapmap];1.00[EUR][1000 genomes]
rs1829417	0.86[YRI][hapmap];0.82[AFR][1000 genomes]
rs1837096	0.86[YRI][hapmap];0.82[AFR][1000 genomes]
rs1837097	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2043736	1.00[EUR][1000 genomes]
rs2164785	0.80[YRI][hapmap]
rs2196636	0.82[AFR][1000 genomes]
rs2351962	0.81[YRI][hapmap]
rs297322	1.00[EUR][1000 genomes]
rs297350	1.00[EUR][1000 genomes]
rs297363	1.00[EUR][1000 genomes]
rs3847559	0.95[YRI][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3985603	0.80[YRI][hapmap]
rs4376869	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4601732	1.00[EUR][1000 genomes]
rs4628642	0.86[YRI][hapmap]
rs4757385	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4757386	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4757391	0.81[YRI][hapmap]
rs60596224	1.00[EUR][1000 genomes]
rs6486280	1.00[EUR][1000 genomes]
rs7115128	1.00[EUR][1000 genomes]
rs7928191	0.95[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7931340	0.95[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7933437	0.89[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7949077	0.81[YRI][hapmap]
rs920237	0.90[YRI][hapmap];1.00[EUR][1000 genomes]
rs962095	0.80[YRI][hapmap]
rs990533	0.95[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs997506	0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv897012	chr11:16189326-16283644	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv553563	chr11:16206658-16259405	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv897013	chr11:16206658-16307700	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv897014	chr11:16211343-16283644	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv467710	chr11:16219341-16266740	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv553564	chr11:16219341-16266740	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv553565	chr11:16220289-16307700	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv897015	chr11:16235962-16307700	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16238600-16260800	Weak transcription	Psoas Muscle	Psoas
2	chr11:16246600-16258600	Weak transcription	Fetal Intestine Large	intestine
3	chr11:16248200-16260600	Weak transcription	Fetal Lung	lung
4	chr11:16248200-16274200	Weak transcription	Pancreas	Pancrea
5	chr11:16248400-16259000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr11:16248400-16260400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:16248600-16257600	Weak transcription	Fetal Intestine Small	intestine
8	chr11:16248600-16258400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr11:16248600-16259000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr11:16256200-16272000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:16257000-16257800	Active TSS	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links