Variant report

Variant	rs3847559
Chromosome Location	chr11:16283060-16283061
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10734239	0.86[YRI][hapmap]
rs10734240	0.95[YRI][hapmap];0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10741692	1.00[EUR][1000 genomes]
rs10741693	0.82[YRI][hapmap]
rs10766307	1.00[EUR][1000 genomes]
rs10766313	0.94[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10766314	0.86[YRI][hapmap]
rs10766315	0.86[YRI][hapmap]
rs10832576	0.86[YRI][hapmap]
rs10832579	0.86[YRI][hapmap]
rs10832584	0.86[YRI][hapmap]
rs11023890	0.86[YRI][hapmap]
rs11023893	0.83[YRI][hapmap]
rs1155685	0.86[YRI][hapmap]
rs1156725	0.90[YRI][hapmap]
rs1347677	0.85[YRI][hapmap]
rs1356646	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1370464	0.95[YRI][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1519122	0.86[YRI][hapmap]
rs1595374	0.86[YRI][hapmap]
rs1607479	0.95[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1837097	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1966698	0.84[AFR][1000 genomes]
rs2043736	0.85[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2164784	0.82[YRI][hapmap]
rs2164785	0.86[YRI][hapmap]
rs2351962	0.86[YRI][hapmap]
rs297322	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs297350	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs297363	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3985603	0.86[YRI][hapmap]
rs4376869	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4601732	1.00[EUR][1000 genomes]
rs4757385	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4757386	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4757391	0.86[YRI][hapmap]
rs60596224	1.00[EUR][1000 genomes]
rs6486280	1.00[EUR][1000 genomes]
rs7115128	1.00[EUR][1000 genomes]
rs7928191	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7931340	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7933437	0.95[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7949077	0.86[YRI][hapmap]
rs920237	0.95[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs962095	0.86[YRI][hapmap]
rs990533	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs997506	0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv897012	chr11:16189326-16283644	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv897013	chr11:16206658-16307700	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv897014	chr11:16211343-16283644	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv553565	chr11:16220289-16307700	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv897015	chr11:16235962-16307700	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3414577	chr11:16270425-16298158	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16270600-16283600	Weak transcription	Fetal Intestine Small	intestine
2	chr11:16271400-16289200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:16271800-16286400	Weak transcription	Psoas Muscle	Psoas
4	chr11:16279600-16300400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr11:16282200-16283600	Enhancers	HepG2	liver
6	chr11:16282600-16283600	Weak transcription	Rectal Mucosa Donor 31	rectum

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