Variant report

Variant	rs920237
Chromosome Location	chr11:16317828-16317829
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16317353..16319622-chr11:16356044..16358376,2	K562	blood:
2	chr11:16306276..16308117-chr11:16316163..16319101,2	K562	blood:
3	chr11:16316414..16318651-chr11:16625484..16627197,2	K562	blood:
4	chr11:16312308..16315200-chr11:16317482..16320293,3	K562	blood:
5	chr11:16315419..16322751-chr11:16322783..16327004,9	K562	blood:
6	chr11:16316414..16319382-chr11:16625484..16628064,2	K562	blood:

Variant related genes	Relation type
ENSG00000110693	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10734239	0.82[YRI][hapmap]
rs10734240	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10741692	1.00[EUR][1000 genomes]
rs10766307	1.00[EUR][1000 genomes]
rs10766313	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10766314	0.81[YRI][hapmap]
rs10766315	0.82[YRI][hapmap]
rs10832576	0.81[YRI][hapmap]
rs10832579	0.82[YRI][hapmap]
rs10832584	0.81[YRI][hapmap]
rs11023890	0.81[YRI][hapmap]
rs1155685	0.82[YRI][hapmap]
rs1156725	0.85[YRI][hapmap]
rs1347677	0.80[YRI][hapmap]
rs1356646	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1370464	0.90[YRI][hapmap];1.00[EUR][1000 genomes]
rs1519122	0.82[YRI][hapmap]
rs1595374	0.82[YRI][hapmap]
rs1607479	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1837097	1.00[EUR][1000 genomes]
rs2043736	0.89[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2164785	0.81[YRI][hapmap]
rs2351962	0.82[YRI][hapmap]
rs297322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs297350	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs297363	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3847559	0.95[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3985603	0.81[YRI][hapmap]
rs4376869	0.81[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4601732	1.00[EUR][1000 genomes]
rs4757385	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4757386	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4757391	0.82[YRI][hapmap]
rs60596224	1.00[EUR][1000 genomes]
rs6486280	1.00[EUR][1000 genomes]
rs7115128	1.00[EUR][1000 genomes]
rs7928191	0.95[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7931340	0.95[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7933437	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7949077	0.82[YRI][hapmap]
rs962095	0.81[YRI][hapmap]
rs990533	0.95[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs997506	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16302200-16321600	Weak transcription	Left Ventricle	heart
2	chr11:16313200-16319800	Enhancers	Fetal Heart	heart
3	chr11:16313400-16322200	Enhancers	Brain Germinal Matrix	brain
4	chr11:16314400-16319000	Weak transcription	Psoas Muscle	Psoas
5	chr11:16315200-16351800	Weak transcription	Fetal Intestine Large	intestine
6	chr11:16315400-16319000	Weak transcription	Fetal Lung	lung
7	chr11:16315400-16319400	Weak transcription	Small Intestine	intestine
8	chr11:16315600-16318800	Weak transcription	Fetal Brain Female	brain
9	chr11:16315600-16319000	Weak transcription	Fetal Muscle Leg	muscle
10	chr11:16315600-16321600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:16315600-16322200	Weak transcription	Fetal Kidney	kidney
12	chr11:16316800-16318200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:16317000-16318400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr11:16317000-16319000	Enhancers	K562	blood
15	chr11:16317000-16320000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr11:16317200-16318200	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr11:16317200-16319400	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr11:16317400-16318200	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr11:16317400-16327400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr11:16317800-16318200	Enhancers	HSMMtube	muscle
21	chr11:16317800-16318400	Enhancers	Pancreatic Islets	Pancreatic Islet
22	chr11:16317800-16319000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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