Variant report

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:16320208..16325267-chr11:16327688..16333055,7	K562	blood:
2	chr11:16321344..16323621-chr11:16628073..16630066,2	K562	blood:
3	chr11:16319654..16322461-chr11:16374502..16376452,2	K562	blood:
4	chr11:16321344..16323134-chr11:16627943..16629573,2	K562	blood:
5	chr11:16315356..16317680-chr11:16319663..16321885,2	K562	blood:
6	chr11:16309641..16311247-chr11:16321242..16323423,2	K562	blood:
7	chr11:16301382..16303241-chr11:16318945..16321849,2	K562	blood:
8	chr11:16315419..16322751-chr11:16322783..16327004,9	K562	blood:

No data

Variant related genes	Relation type
ENSG00000110693	Chromatin interaction

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10734240	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10741692	1.00[EUR][1000 genomes]
rs10766307	1.00[EUR][1000 genomes]
rs10766313	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1356646	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1370464	1.00[EUR][1000 genomes]
rs1607479	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1837097	1.00[EUR][1000 genomes]
rs2043736	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs297350	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs297363	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3847559	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4376869	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4601732	1.00[EUR][1000 genomes]
rs4757385	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4757386	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60596224	1.00[EUR][1000 genomes]
rs6486280	1.00[EUR][1000 genomes]
rs7115128	1.00[EUR][1000 genomes]
rs7928191	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7931340	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7933437	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs920237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs990533	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16313400-16322200	Enhancers	Brain Germinal Matrix	brain
2	chr11:16315200-16351800	Weak transcription	Fetal Intestine Large	intestine
3	chr11:16315600-16322200	Weak transcription	Fetal Kidney	kidney
4	chr11:16317400-16327400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:16319400-16322000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:16319400-16377600	Weak transcription	Psoas Muscle	Psoas
7	chr11:16320600-16340600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:16321000-16322000	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr11:16321200-16322400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:16321400-16322400	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr11:16321600-16322000	Flanking Active TSS	K562	blood
12	chr11:16321600-16323000	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr11:16321600-16323000	Enhancers	Fetal Heart	heart
14	chr11:16321800-16322400	Enhancers	Fetal Lung	lung
15	chr11:16321800-16322400	Enhancers	Skeletal Muscle Male	skeletal muscle

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