Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16256169..16258785-chr11:16346996..16349123,2	K562	blood:
2	chr11:16342019..16344770-chr11:16347995..16350798,2	K562	blood:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10734240	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10741692	1.00[EUR][1000 genomes]
rs10766307	1.00[EUR][1000 genomes]
rs10766313	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1356646	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1370464	1.00[EUR][1000 genomes]
rs1607479	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1837097	1.00[EUR][1000 genomes]
rs2043736	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs297322	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs297363	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3847559	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4376869	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4601732	1.00[EUR][1000 genomes]
rs4757385	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4757386	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60596224	1.00[EUR][1000 genomes]
rs6486280	1.00[EUR][1000 genomes]
rs7115128	1.00[EUR][1000 genomes]
rs7928191	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7931340	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7933437	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs920237	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs990533	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16315200-16351800	Weak transcription	Fetal Intestine Large	intestine
2	chr11:16319400-16377600	Weak transcription	Psoas Muscle	Psoas
3	chr11:16328600-16348400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr11:16333800-16356400	Weak transcription	Fetal Intestine Small	intestine
5	chr11:16340800-16357600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr11:16344600-16351800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:16345800-16367000	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr11:16346200-16356800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr11:16347600-16348600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr11:16348000-16349600	Enhancers	K562	blood
11	chr11:16348200-16348400	Enhancers	Left Ventricle	heart
12	chr11:16348200-16348800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:16348200-16349200	Enhancers	NHLF	lung

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