Variant report

Variant	rs7115128
Chromosome Location	chr11:16243374-16243375
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16240077..16244324-chr11:16251034..16255034,5	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10734240	1.00[EUR][1000 genomes]
rs10741692	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10766307	1.00[EUR][1000 genomes]
rs10766313	1.00[EUR][1000 genomes]
rs1356646	1.00[EUR][1000 genomes]
rs1370464	1.00[EUR][1000 genomes]
rs1607479	1.00[EUR][1000 genomes]
rs1837097	1.00[EUR][1000 genomes]
rs2043736	1.00[EUR][1000 genomes]
rs297322	1.00[EUR][1000 genomes]
rs297350	1.00[EUR][1000 genomes]
rs297363	1.00[EUR][1000 genomes]
rs3847559	1.00[EUR][1000 genomes]
rs4376869	1.00[EUR][1000 genomes]
rs4601732	1.00[EUR][1000 genomes]
rs4757385	1.00[EUR][1000 genomes]
rs4757386	1.00[EUR][1000 genomes]
rs60596224	1.00[EUR][1000 genomes]
rs6486280	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7928191	1.00[EUR][1000 genomes]
rs7931340	1.00[EUR][1000 genomes]
rs7933437	1.00[EUR][1000 genomes]
rs920237	1.00[EUR][1000 genomes]
rs990533	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv897012	chr11:16189326-16283644	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv553563	chr11:16206658-16259405	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv897013	chr11:16206658-16307700	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv897014	chr11:16211343-16283644	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv467710	chr11:16219341-16266740	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv553564	chr11:16219341-16266740	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv553565	chr11:16220289-16307700	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv897015	chr11:16235962-16307700	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16224400-16247200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr11:16238600-16260800	Weak transcription	Psoas Muscle	Psoas
3	chr11:16239600-16248200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:16242600-16245000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr11:16243200-16243600	Enhancers	Primary neutrophils fromperipheralblood	blood

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