Variant report

Variant	rs1403046
Chromosome Location	chr3:160478066-160478067
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:160475234..160478424-chr3:160481295..160484751,3	MCF-7	breast:
2	chr3:160471736..160473920-chr3:160477705..160480037,3	K562	blood:
3	chr3:160471123..160476793-chr3:160477705..160482988,8	K562	blood:

Variant related genes	Relation type
ENSG00000260572	Chromatin interaction
ENSG00000163590	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs62272772	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62272773	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62272774	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62272775	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62272776	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62272778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62272811	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62272812	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62272813	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62272814	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62272815	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62272816	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62272818	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs62272820	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs62272821	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs62272824	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs62272827	1.00[AFR][1000 genomes]
rs62272830	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160475600-160478200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr3:160475600-160478800	Active TSS	Brain Inferior Temporal Lobe	brain
3	chr3:160475800-160497200	Weak transcription	Left Ventricle	heart
4	chr3:160476000-160478200	Enhancers	Colon Smooth Muscle	Colon
5	chr3:160476000-160480800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:160476000-160496400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr3:160476200-160479200	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr3:160477200-160479600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:160477400-160478400	Enhancers	Fetal Brain Male	brain
10	chr3:160477400-160489600	Weak transcription	Fetal Heart	heart
11	chr3:160477600-160478400	Active TSS	Stomach Smooth Muscle	stomach
12	chr3:160477600-160483000	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr3:160477600-160489800	Weak transcription	Brain Anterior Caudate	brain
14	chr3:160477600-160497000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr3:160477600-160498200	Weak transcription	Stomach Mucosa	stomach
16	chr3:160477800-160479200	Active TSS	Fetal Brain Female	brain
17	chr3:160477800-160485600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr3:160477800-160488200	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr3:160477800-160497800	Weak transcription	Brain Angular Gyrus	brain
20	chr3:160478000-160478400	Weak transcription	Brain Germinal Matrix	brain
21	chr3:160478000-160479200	Weak transcription	Psoas Muscle	Psoas
22	chr3:160478000-160479200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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