Variant report

Variant	rs62272774
Chromosome Location	chr3:160465123-160465124
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1403046	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62272772	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62272773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62272775	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62272776	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62272778	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62272811	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62272812	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62272813	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62272814	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62272815	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62272816	0.87[EUR][1000 genomes]
rs62272818	0.87[EUR][1000 genomes]
rs62272820	0.85[EUR][1000 genomes]
rs62272821	0.85[EUR][1000 genomes]
rs62272824	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160464600-160465200	Enhancers	Brain Substantia Nigra	brain
2	chr3:160464600-160465400	Enhancers	Fetal Brain Male	brain
3	chr3:160464600-160465800	Weak transcription	Psoas Muscle	Psoas
4	chr3:160464600-160465800	Enhancers	Hela-S3	cervix
5	chr3:160464600-160466400	Enhancers	Brain Angular Gyrus	brain
6	chr3:160464800-160465400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr3:160464800-160465400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr3:160464800-160465400	Enhancers	Stomach Mucosa	stomach
9	chr3:160464800-160465800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr3:160464800-160465800	Weak transcription	Colon Smooth Muscle	Colon
11	chr3:160465000-160465600	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr3:160465000-160465800	Active TSS	Brain Anterior Caudate	brain
13	chr3:160465000-160465800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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