Variant report

Variant	rs62272775
Chromosome Location	chr3:160467772-160467773
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:160465487..160468166-chr3:160471730..160473574,2	MCF-7	breast:
2	chr3:160463091..160465214-chr3:160466163..160468286,3	K562	blood:
3	chr3:160462741..160464683-chr3:160466786..160468860,3	K562	blood:
4	chr3:160467646..160471056-chr3:160471493..160474587,3	K562	blood:

Variant related genes	Relation type
ENSG00000260572	Chromatin interaction
ENSG00000163590	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1403046	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62272772	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62272773	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62272774	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62272776	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62272778	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62272811	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62272812	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62272813	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62272814	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62272815	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62272816	0.94[EUR][1000 genomes]
rs62272818	0.94[EUR][1000 genomes]
rs62272820	0.91[EUR][1000 genomes]
rs62272821	0.91[EUR][1000 genomes]
rs62272824	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160465400-160471400	Weak transcription	Fetal Brain Male	brain
2	chr3:160465800-160472200	Weak transcription	Hela-S3	cervix
3	chr3:160466000-160470600	Weak transcription	Brain Anterior Caudate	brain
4	chr3:160466000-160471200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr3:160466000-160472000	Weak transcription	Gastric	stomach
6	chr3:160466000-160472000	Weak transcription	Psoas Muscle	Psoas
7	chr3:160466200-160471200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr3:160466200-160471400	Weak transcription	Colon Smooth Muscle	Colon
9	chr3:160466200-160472000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr3:160466200-160472000	Weak transcription	Left Ventricle	heart
11	chr3:160466400-160470000	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr3:160466400-160470800	Weak transcription	Brain Angular Gyrus	brain
13	chr3:160466400-160471200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr3:160466400-160471200	Weak transcription	Rectal Smooth Muscle	rectum
15	chr3:160466400-160471400	Weak transcription	Adipose Nuclei	Adipose
16	chr3:160466400-160471400	Weak transcription	Brain Substantia Nigra	brain
17	chr3:160466800-160471400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr3:160467200-160470000	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr3:160467200-160471200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr3:160467400-160471600	Weak transcription	Liver	Liver
21	chr3:160467400-160472000	Weak transcription	Pancreas	Pancrea
22	chr3:160467600-160470600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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