Variant report

Variant	rs62272778
Chromosome Location	chr3:160477111-160477112
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr3:160476503-160477360	SK-N-SH	brain:	n/a	n/a
2	RAD21	chr3:160476821-160477113	SK-N-SH_RA	brain:	n/a	n/a
3	RAD21	chr3:160476657-160477225	MCF-7	breast:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:160476666..160477325-chr3:160647136..160648071,2	MCF-7	breast:
2	chr3:160475234..160478424-chr3:160481295..160484751,3	MCF-7	breast:
3	chr3:160476483..160477376-chr3:160638819..160639589,2	MCF-7	breast:
4	chr3:160475604..160477135-chr3:160498622..160500263,2	K562	blood:
5	chr3:160475052..160477817-chr3:160492377..160494723,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000260572	TF binding region

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1403046	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62272772	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62272773	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62272774	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62272775	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62272776	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62272811	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62272812	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62272813	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62272814	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62272815	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62272816	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62272818	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs62272820	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs62272821	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs62272824	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs62272827	1.00[AFR][1000 genomes]
rs62272830	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160472000-160477800	Active TSS	Brain Angular Gyrus	brain
2	chr3:160472000-160477800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
3	chr3:160472200-160477400	Active TSS	Fetal Brain Female	brain
4	chr3:160472200-160477800	Active TSS	Duodenum Smooth Muscle	Duodenum
5	chr3:160475400-160477200	Active TSS	Stomach Smooth Muscle	stomach
6	chr3:160475600-160477600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:160475600-160477600	Enhancers	Stomach Mucosa	stomach
8	chr3:160475600-160478200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr3:160475600-160478800	Active TSS	Brain Inferior Temporal Lobe	brain
10	chr3:160475800-160477600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr3:160475800-160497200	Weak transcription	Left Ventricle	heart
12	chr3:160476000-160477200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr3:160476000-160477200	Weak transcription	Adipose Nuclei	Adipose
14	chr3:160476000-160477200	Active TSS	Fetal Brain Male	brain
15	chr3:160476000-160477400	Enhancers	Fetal Heart	heart
16	chr3:160476000-160477600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr3:160476000-160477600	Active TSS	Brain Anterior Caudate	brain
18	chr3:160476000-160478200	Enhancers	Colon Smooth Muscle	Colon
19	chr3:160476000-160480800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr3:160476000-160496400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr3:160476200-160477200	Active TSS	Skeletal Muscle Female	skeletal muscle
22	chr3:160476200-160477400	Enhancers	Primary T cells from cord blood	blood
23	chr3:160476200-160479200	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr3:160476400-160477200	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr3:160476600-160477200	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
26	chr3:160476600-160477600	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr3:160476600-160477600	Enhancers	Hela-S3	cervix
28	chr3:160476800-160477200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr3:160476800-160477200	Enhancers	Dnd41	blood
30	chr3:160476800-160477600	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr3:160477000-160477200	Flanking Active TSS	Brain Cingulate Gyrus	brain
32	chr3:160477000-160477400	Flanking Active TSS	Brain Germinal Matrix	brain
33	chr3:160477000-160477400	Enhancers	Brain Substantia Nigra	brain
34	chr3:160477000-160477400	Active TSS	Psoas Muscle	Psoas

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