Variant report

Variant	rs62272811
Chromosome Location	chr3:160480275-160480276
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1403046	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62272772	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62272773	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62272774	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62272775	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62272776	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62272778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62272812	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62272813	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62272814	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62272815	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62272816	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62272818	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs62272820	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs62272821	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs62272824	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs62272827	1.00[AFR][1000 genomes]
rs62272830	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160475800-160497200	Weak transcription	Left Ventricle	heart
2	chr3:160476000-160480800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:160476000-160496400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr3:160477400-160489600	Weak transcription	Fetal Heart	heart
5	chr3:160477600-160483000	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr3:160477600-160489800	Weak transcription	Brain Anterior Caudate	brain
7	chr3:160477600-160497000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr3:160477600-160498200	Weak transcription	Stomach Mucosa	stomach
9	chr3:160477800-160485600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr3:160477800-160488200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr3:160477800-160497800	Weak transcription	Brain Angular Gyrus	brain
12	chr3:160478400-160481400	Weak transcription	Fetal Brain Male	brain
13	chr3:160478400-160482800	Weak transcription	Stomach Smooth Muscle	stomach
14	chr3:160479200-160481600	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr3:160479200-160483000	Weak transcription	Colon Smooth Muscle	Colon
16	chr3:160479600-160481200	Weak transcription	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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