Variant report

Variant	rs62272815
Chromosome Location	chr3:160493328-160493329
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1403046	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62272772	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62272773	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62272774	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62272775	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62272776	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62272778	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62272811	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62272812	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62272813	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62272814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62272816	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62272818	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62272820	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs62272821	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs62272824	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs62272827	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs62272830	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160475800-160497200	Weak transcription	Left Ventricle	heart
2	chr3:160476000-160496400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr3:160477600-160497000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr3:160477600-160498200	Weak transcription	Stomach Mucosa	stomach
5	chr3:160477800-160497800	Weak transcription	Brain Angular Gyrus	brain
6	chr3:160484400-160496600	Weak transcription	Primary T cells from cord blood	blood
7	chr3:160487200-160502200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr3:160490200-160495200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr3:160490200-160498200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr3:160490400-160496400	Weak transcription	Brain Hippocampus Middle	brain
11	chr3:160490400-160496400	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr3:160490400-160496400	Weak transcription	Fetal Heart	heart
13	chr3:160490800-160494600	Enhancers	Stomach Smooth Muscle	stomach
14	chr3:160491400-160495600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr3:160492400-160493600	Enhancers	Colon Smooth Muscle	Colon
16	chr3:160492400-160498800	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr3:160493200-160495400	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr3:160493200-160496400	Weak transcription	Psoas Muscle	Psoas

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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