Variant report

Variant	rs1459283
Chromosome Location	chr4:21708295-21708296
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10516397	0.89[CEU][hapmap];0.80[JPT][hapmap];0.83[EUR][1000 genomes]
rs10938853	0.91[EUR][1000 genomes]
rs11735616	0.93[EUR][1000 genomes]
rs13127601	0.80[EUR][1000 genomes]
rs1459282	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1503978	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1983082	0.83[EUR][1000 genomes]
rs1983083	0.84[EUR][1000 genomes]
rs4235290	0.84[EUR][1000 genomes]
rs4235291	0.89[CEU][hapmap];0.80[JPT][hapmap];0.98[TSI][hapmap];0.93[EUR][1000 genomes]
rs4256212	0.86[EUR][1000 genomes]
rs4337724	0.91[EUR][1000 genomes]
rs4359890	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4469066	0.84[EUR][1000 genomes]
rs4507349	0.96[CEU][hapmap];0.80[JPT][hapmap];0.86[EUR][1000 genomes]
rs4585286	0.84[EUR][1000 genomes]
rs4621420	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs4697233	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4697234	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6850480	1.00[ASW][hapmap];0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.88[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6851124	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7669340	0.92[EUR][1000 genomes]
rs7676963	0.96[CEU][hapmap];0.80[JPT][hapmap];0.84[EUR][1000 genomes]
rs9291429	1.00[CEU][hapmap];0.90[CHD][hapmap];0.86[GIH][hapmap];0.93[JPT][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21699600-21708400	Weak transcription	Brain Anterior Caudate	brain
2	chr4:21707200-21708800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:21707800-21708400	Enhancers	Brain Hippocampus Middle	brain
4	chr4:21708000-21709200	Enhancers	Fetal Heart	heart

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