Variant report

Variant	rs4621420
Chromosome Location	chr4:21697119-21697120
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr4:21695582-21700436	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000248343	TF binding region

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10516397	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10938853	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11735616	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13127601	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1459282	0.91[CEU][hapmap];0.81[JPT][hapmap];0.84[EUR][1000 genomes]
rs1459283	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs1503978	0.84[EUR][1000 genomes]
rs1983082	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1983083	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4235290	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4235291	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4256212	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4337724	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4359890	0.83[EUR][1000 genomes]
rs4469066	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4507349	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4585286	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4697233	0.83[EUR][1000 genomes]
rs4697234	0.92[CEU][hapmap];0.81[JPT][hapmap];0.83[EUR][1000 genomes]
rs6850480	0.87[CEU][hapmap];0.81[JPT][hapmap]
rs7669340	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7676963	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9291429	0.91[CEU][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21694000-21699200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:21694600-21698600	Weak transcription	Fetal Lung	lung
3	chr4:21694600-21699200	Weak transcription	Colon Smooth Muscle	Colon

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