Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GPR125-4	chr4:21701949-21702522	NONHSAT095742

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10516397	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10938853	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11735616	0.86[EUR][1000 genomes]
rs13127601	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1459282	0.86[EUR][1000 genomes]
rs1459283	0.86[EUR][1000 genomes]
rs1503978	0.86[EUR][1000 genomes]
rs1983082	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1983083	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4235290	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4235291	0.86[EUR][1000 genomes]
rs4337724	0.87[EUR][1000 genomes]
rs4359890	0.85[EUR][1000 genomes]
rs4469066	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4507349	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4585286	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4621420	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4697233	0.88[EUR][1000 genomes]
rs4697234	0.88[EUR][1000 genomes]
rs7669340	0.86[EUR][1000 genomes]
rs7676963	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9291429	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21699600-21708400	Weak transcription	Brain Anterior Caudate	brain

Quick Search: