Variant report

Variant	rs4235291
Chromosome Location	chr4:21707905-21707906
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10516397	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10938853	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11735616	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13127601	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1459282	0.89[CEU][hapmap];0.82[JPT][hapmap];0.98[TSI][hapmap];0.93[EUR][1000 genomes]
rs1459283	0.89[CEU][hapmap];0.80[JPT][hapmap];0.98[TSI][hapmap];0.93[EUR][1000 genomes]
rs1503978	0.92[EUR][1000 genomes]
rs1983082	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1983083	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4235290	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4256212	0.86[EUR][1000 genomes]
rs4337724	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4359890	0.92[EUR][1000 genomes]
rs4469066	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4507349	0.92[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs4585286	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4621420	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4697233	0.90[EUR][1000 genomes]
rs4697234	0.89[CEU][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes]
rs6850480	0.85[CEU][hapmap];0.82[JPT][hapmap];0.93[TSI][hapmap];0.80[EUR][1000 genomes]
rs7669340	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7676963	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9291429	0.88[CEU][hapmap];0.93[TSI][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4235291	ZCCHC4	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21699600-21708400	Weak transcription	Brain Anterior Caudate	brain
2	chr4:21707200-21708800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:21707800-21708200	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr4:21707800-21708400	Enhancers	Brain Hippocampus Middle	brain

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