Variant report

Variant	rs1515525
Chromosome Location	chr3:102761204-102761205
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12497289	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13083372	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13098186	0.88[ASN][1000 genomes]
rs1515537	0.82[ASN][1000 genomes]
rs1515538	0.85[ASN][1000 genomes]
rs1947581	0.82[ASN][1000 genomes]
rs346881	0.96[ASN][1000 genomes]
rs346883	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs346886	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs346890	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs346895	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3849512	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55868901	0.93[ASN][1000 genomes]
rs6765316	0.86[ASN][1000 genomes]
rs6766807	0.85[ASN][1000 genomes]
rs73151188	0.85[ASN][1000 genomes]
rs73153119	0.86[ASN][1000 genomes]
rs73153122	0.93[ASN][1000 genomes]
rs7648498	0.85[ASN][1000 genomes]
rs826337	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs826338	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9835371	0.93[ASN][1000 genomes]
rs9842988	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591190	chr3:102345638-102946216	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1000584	chr3:102358773-102923378	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv915978	chr3:102386795-102949530	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv460792	chr3:102467051-103087654	ZNF genes & repeats Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv591191	chr3:102467051-103087654	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:102760800-102761400	Enhancers	Hela-S3	cervix

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