Variant report

Variant	rs346886
Chromosome Location	chr3:102772200-102772201
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12497289	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13083372	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13098186	0.95[ASN][1000 genomes]
rs1515525	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1515537	0.86[ASN][1000 genomes]
rs1515538	0.88[ASN][1000 genomes]
rs1947581	0.86[ASN][1000 genomes]
rs346881	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs346883	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs346890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs346895	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3849512	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55868901	1.00[ASN][1000 genomes]
rs6765316	0.90[ASN][1000 genomes]
rs6766807	0.88[ASN][1000 genomes]
rs73151188	0.84[ASN][1000 genomes]
rs73153119	0.85[ASN][1000 genomes]
rs73153122	0.92[ASN][1000 genomes]
rs7648498	0.88[ASN][1000 genomes]
rs826337	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs826338	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9835371	1.00[ASN][1000 genomes]
rs9842988	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591190	chr3:102345638-102946216	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1000584	chr3:102358773-102923378	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv915978	chr3:102386795-102949530	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv460792	chr3:102467051-103087654	ZNF genes & repeats Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv591191	chr3:102467051-103087654	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:102769800-102773000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr3:102770600-102772200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:102770800-102772200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:102770800-102772200	Enhancers	Adipose Nuclei	Adipose
5	chr3:102770800-102772200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr3:102770800-102772600	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr3:102771000-102772200	Enhancers	Fetal Intestine Large	intestine
8	chr3:102771000-102772200	Enhancers	Fetal Lung	lung
9	chr3:102771000-102772200	Enhancers	Hela-S3	cervix
10	chr3:102771000-102775600	Enhancers	Fetal Intestine Small	intestine
11	chr3:102771200-102772200	Enhancers	Duodenum Mucosa	Duodenum
12	chr3:102771200-102772200	Enhancers	Small Intestine	intestine
13	chr3:102771400-102772200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr3:102771400-102772200	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr3:102771400-102772200	Enhancers	Fetal Muscle Leg	muscle
16	chr3:102771400-102772200	Enhancers	Placenta	Placenta
17	chr3:102772200-102773200	Weak transcription	Fetal Intestine Large	intestine
18	chr3:102772200-102773600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr3:102772200-102774000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:102772200-102774200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr3:102772200-102775200	Weak transcription	Adipose Nuclei	Adipose
22	chr3:102772200-102775600	Weak transcription	Duodenum Mucosa	Duodenum
23	chr3:102772200-102775600	Weak transcription	Fetal Muscle Leg	muscle
24	chr3:102772200-102775800	Weak transcription	Small Intestine	intestine

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