Variant report
Variant | rs13098186 |
---|---|
Chromosome Location | chr3:102781665-102781666 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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No data |
rs_ID | r2[population] |
---|---|
rs12497289 | 0.99[ASN][1000 genomes] |
rs13083372 | 1.00[ASN][1000 genomes] |
rs1515525 | 0.88[ASN][1000 genomes] |
rs1515537 | 0.82[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs1515538 | 0.86[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs1947581 | 0.82[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs3104439 | 0.82[EUR][1000 genomes] |
rs345586 | 0.90[EUR][1000 genomes] |
rs346881 | 0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs346883 | 0.95[ASN][1000 genomes] |
rs346886 | 0.95[ASN][1000 genomes] |
rs346890 | 0.95[ASN][1000 genomes] |
rs346895 | 0.95[ASN][1000 genomes] |
rs3849512 | 0.99[ASN][1000 genomes] |
rs55868901 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs6765316 | 0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs6766807 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs6798067 | 0.81[EUR][1000 genomes] |
rs697786 | 0.84[EUR][1000 genomes] |
rs708314 | 0.84[EUR][1000 genomes] |
rs708315 | 0.84[EUR][1000 genomes] |
rs708316 | 0.84[EUR][1000 genomes] |
rs73151188 | 0.95[EUR][1000 genomes] |
rs73153119 | 0.95[EUR][1000 genomes] |
rs73153122 | 0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs7648498 | 0.86[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs826337 | 1.00[ASN][1000 genomes] |
rs826338 | 0.95[ASN][1000 genomes] |
rs9835371 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs9842988 | 0.86[EUR][1000 genomes];0.92[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv591190 | chr3:102345638-102946216 | Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
2 | nsv1000584 | chr3:102358773-102923378 | Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
3 | nsv915978 | chr3:102386795-102949530 | Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
4 | nsv460792 | chr3:102467051-103087654 | ZNF genes & repeats Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
5 | nsv591191 | chr3:102467051-103087654 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
6 | nsv997532 | chr3:102777201-102811504 | Enhancers Weak transcription ZNF genes & repeats Active TSS | n/a | n/a | inside rSNPs | diseases |
7 | nsv1011942 | chr3:102779830-102834045 | Enhancers Weak transcription Active TSS ZNF genes & repeats | lncRNA | 1 gene(s) | inside rSNPs | diseases |
8 | nsv591192 | chr3:102780030-102846337 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS | lncRNA | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:102780200-102784000 | Weak transcription | Fetal Intestine Small | intestine |