Variant report

Variant	rs9835371
Chromosome Location	chr3:102775176-102775177
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12497289	0.93[ASN][1000 genomes]
rs13083372	0.95[ASN][1000 genomes]
rs13098186	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1515525	0.93[ASN][1000 genomes]
rs1515537	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1515538	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1947581	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3104439	0.82[EUR][1000 genomes]
rs345586	0.90[EUR][1000 genomes]
rs346881	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs346883	1.00[ASN][1000 genomes]
rs346886	1.00[ASN][1000 genomes]
rs346890	1.00[ASN][1000 genomes]
rs346895	1.00[ASN][1000 genomes]
rs3849512	0.93[ASN][1000 genomes]
rs55868901	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6765316	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6766807	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6798067	0.81[EUR][1000 genomes]
rs697786	0.84[EUR][1000 genomes]
rs708314	0.84[EUR][1000 genomes]
rs708315	0.84[EUR][1000 genomes]
rs708316	0.84[EUR][1000 genomes]
rs73151188	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73153119	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73153122	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7648498	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs826337	0.95[ASN][1000 genomes]
rs826338	1.00[ASN][1000 genomes]
rs9842988	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591190	chr3:102345638-102946216	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1000584	chr3:102358773-102923378	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv915978	chr3:102386795-102949530	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv460792	chr3:102467051-103087654	ZNF genes & repeats Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv591191	chr3:102467051-103087654	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:102771000-102775600	Enhancers	Fetal Intestine Small	intestine
2	chr3:102772200-102775200	Weak transcription	Adipose Nuclei	Adipose
3	chr3:102772200-102775600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr3:102772200-102775600	Weak transcription	Fetal Muscle Leg	muscle
5	chr3:102772200-102775800	Weak transcription	Small Intestine	intestine
6	chr3:102773200-102777200	Enhancers	Fetal Intestine Large	intestine
7	chr3:102774000-102776400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:102774200-102776200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:102774800-102775200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr3:102775000-102776000	Enhancers	Stomach Mucosa	stomach

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