Variant report

Variant	rs1947581
Chromosome Location	chr3:102803572-102803573
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12497289	0.92[ASN][1000 genomes]
rs13083372	0.91[ASN][1000 genomes]
rs13098186	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1515525	0.82[ASN][1000 genomes]
rs1515537	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1515538	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs346881	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs346883	0.86[ASN][1000 genomes]
rs346886	0.86[ASN][1000 genomes]
rs346890	0.86[ASN][1000 genomes]
rs346895	0.86[ASN][1000 genomes]
rs3849512	0.92[ASN][1000 genomes]
rs55868901	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6765316	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6766807	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6798067	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73153122	0.81[ASN][1000 genomes]
rs7648498	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs826337	0.91[ASN][1000 genomes]
rs826338	0.86[ASN][1000 genomes]
rs9835371	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9842988	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591190	chr3:102345638-102946216	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1000584	chr3:102358773-102923378	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv915978	chr3:102386795-102949530	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv460792	chr3:102467051-103087654	ZNF genes & repeats Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv591191	chr3:102467051-103087654	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv997532	chr3:102777201-102811504	Enhancers Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv1011942	chr3:102779830-102834045	Enhancers Weak transcription Active TSS ZNF genes & repeats	lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv591192	chr3:102780030-102846337	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv877233	chr3:102787456-102956925	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	esv3419239	chr3:102801662-102803760	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:102802800-102805400	Enhancers	Fetal Intestine Large	intestine
2	chr3:102802800-102805400	Enhancers	Fetal Intestine Small	intestine
3	chr3:102803400-102805600	Enhancers	Fetal Kidney	kidney

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