Variant report

Variant	rs73153122
Chromosome Location	chr3:102731361-102731362
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12054329	0.81[EUR][1000 genomes]
rs12497289	0.88[ASN][1000 genomes]
rs13083372	0.87[ASN][1000 genomes]
rs13098186	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1515525	0.93[ASN][1000 genomes]
rs1515537	0.81[ASN][1000 genomes]
rs1515538	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1705950	0.81[EUR][1000 genomes]
rs1947581	0.81[ASN][1000 genomes]
rs3104439	0.84[EUR][1000 genomes]
rs345586	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs346881	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs346883	0.92[ASN][1000 genomes]
rs346886	0.92[ASN][1000 genomes]
rs346890	0.92[ASN][1000 genomes]
rs346895	0.92[ASN][1000 genomes]
rs3849512	0.88[ASN][1000 genomes]
rs55868901	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6765316	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6766807	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs697786	0.86[EUR][1000 genomes]
rs708314	0.86[EUR][1000 genomes]
rs708315	0.86[EUR][1000 genomes]
rs708316	0.86[EUR][1000 genomes]
rs73151188	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73153119	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7648498	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs825342	0.81[EUR][1000 genomes]
rs826337	0.87[ASN][1000 genomes]
rs826338	0.92[ASN][1000 genomes]
rs9835371	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9842988	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877228	chr3:102345638-102751470	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv591190	chr3:102345638-102946216	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1000584	chr3:102358773-102923378	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv915978	chr3:102386795-102949530	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv460792	chr3:102467051-103087654	ZNF genes & repeats Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv591191	chr3:102467051-103087654	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	esv3380579	chr3:102727862-102731460	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:102723600-102731400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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