Variant report

Variant	rs1525361
Chromosome Location	chr6:64094892-64094893
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:64060326..64062411-chr6:64092797..64095365,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1010057	1.00[ASN][1000 genomes]
rs1320419	0.92[ASN][1000 genomes]
rs1404779	1.00[ASN][1000 genomes]
rs1525354	0.92[CHD][hapmap]
rs1525355	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1525357	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1711906	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1711912	0.86[MEX][hapmap]
rs1711918	0.92[ASN][1000 genomes]
rs1723499	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1723500	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1723503	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1723527	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];0.96[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1723528	0.92[ASN][1000 genomes]
rs1723531	0.92[CHD][hapmap]
rs1741810	1.00[ASN][1000 genomes]
rs1741813	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1779757	0.92[CHD][hapmap];0.86[MEX][hapmap]
rs1779758	0.86[MEX][hapmap]
rs1857565	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2005098	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2622277	1.00[CHB][hapmap]
rs2677023	0.92[CHD][hapmap]
rs2677024	0.92[CHD][hapmap]
rs2677026	0.92[ASN][1000 genomes]
rs2677027	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2677029	0.88[ASN][1000 genomes]
rs2753071	0.92[ASN][1000 genomes]
rs2753072	0.92[ASN][1000 genomes]
rs2753073	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2800024	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2800025	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap]
rs2800031	1.00[ASN][1000 genomes]
rs2800033	0.92[ASN][1000 genomes]
rs2800034	0.92[ASN][1000 genomes]
rs2800035	0.92[ASN][1000 genomes]
rs56212786	0.88[ASN][1000 genomes]
rs732948	0.92[ASN][1000 genomes]
rs7750785	1.00[ASN][1000 genomes]
rs7767012	0.88[ASN][1000 genomes]
rs824380	0.92[ASN][1000 genomes]
rs824381	0.96[ASN][1000 genomes]
rs824390	0.92[ASN][1000 genomes]
rs824391	1.00[ASN][1000 genomes]
rs824392	1.00[ASN][1000 genomes]
rs824393	1.00[ASN][1000 genomes]
rs824394	0.92[ASN][1000 genomes]
rs861113	0.92[ASN][1000 genomes]
rs865415	1.00[ASN][1000 genomes]
rs865416	1.00[ASN][1000 genomes]
rs940741	0.92[ASN][1000 genomes]
rs9767041	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019831	chr6:63279677-64230736	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv538270	chr6:63682752-64147241	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1031548	chr6:64026862-64102045	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1030651	chr6:64028392-64102045	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64076400-64113600	Weak transcription	Placenta	Placenta
2	chr6:64091200-64095000	Enhancers	Fetal Intestine Large	intestine
3	chr6:64091800-64095600	Enhancers	HepG2	liver
4	chr6:64093200-64095600	Enhancers	Liver	Liver
5	chr6:64093600-64095000	Enhancers	GM12878-XiMat	blood
6	chr6:64094200-64099400	Weak transcription	Fetal Intestine Small	intestine
7	chr6:64094400-64101400	Weak transcription	A549	lung

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