Variant report

Variant	rs1527469
Chromosome Location	chr7:80370404-80370405
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:80361578..80363736-chr7:80369634..80371408,2	MCF-7	breast:
2	chr7:80367015..80368560-chr7:80369337..80371836,2	MCF-7	breast:
3	chr7:80361342..80364032-chr7:80368718..80371307,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10499863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10808255	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11770916	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12670520	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1358338	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1358339	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1405746	0.83[AFR][1000 genomes]
rs1527466	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1527471	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1527473	0.96[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1527474	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1609151	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1609152	0.93[AFR][1000 genomes]
rs1852539	0.92[AFR][1000 genomes]
rs1918371	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1918372	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1918373	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1918374	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1918375	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1949970	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2222713	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2366858	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2886791	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6467337	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6467363	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6467371	0.89[YRI][hapmap];0.86[AFR][1000 genomes]
rs6958853	1.00[AMR][1000 genomes]
rs6958863	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6963015	0.92[AFR][1000 genomes]
rs6969280	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9641897	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80359400-80378000	Weak transcription	Psoas Muscle	Psoas
2	chr7:80359600-80373800	Weak transcription	Fetal Muscle Leg	muscle
3	chr7:80360600-80377800	Weak transcription	Left Ventricle	heart
4	chr7:80361400-80373600	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr7:80363600-80385200	Weak transcription	Fetal Stomach	stomach
6	chr7:80366200-80370800	Weak transcription	HMEC	breast
7	chr7:80366200-80374000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr7:80367400-80370600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr7:80368400-80394800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr7:80369000-80372400	Genic enhancers	HSMM	muscle
11	chr7:80369000-80377600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr7:80369200-80373800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr7:80369200-80374000	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr7:80369200-80402200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr7:80369400-80372600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr7:80369600-80370800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr7:80369600-80372400	Enhancers	Muscle Satellite Cultured Cells	--
18	chr7:80369800-80371600	Enhancers	Hela-S3	cervix
19	chr7:80369800-80374000	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr7:80370000-80371000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr7:80370000-80372000	Enhancers	Osteobl	bone
22	chr7:80370000-80377800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr7:80370200-80370600	Enhancers	NHDF-Ad	bronchial
24	chr7:80370200-80370800	Enhancers	Rectal Smooth Muscle	rectum
25	chr7:80370200-80371600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr7:80370200-80371800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr7:80370200-80372000	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr7:80370200-80372200	Enhancers	NH-A	brain
29	chr7:80370200-80372400	Enhancers	NHLF	lung
30	chr7:80370400-80370600	Enhancers	iPS-20b Cell Line	embryonic stem cell
31	chr7:80370400-80370600	Enhancers	Duodenum Smooth Muscle	Duodenum
32	chr7:80370400-80370800	Enhancers	Fetal Lung	lung
33	chr7:80370400-80371000	Flanking Active TSS	A549	lung
34	chr7:80370400-80374200	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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