Variant report

Variant	rs1609152
Chromosome Location	chr7:80365347-80365348
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10499863	0.93[AFR][1000 genomes]
rs10808255	0.87[AFR][1000 genomes]
rs11770916	0.88[AFR][1000 genomes]
rs1358339	0.90[AFR][1000 genomes]
rs1527466	0.88[AFR][1000 genomes]
rs1527469	0.93[AFR][1000 genomes]
rs1527471	0.93[AFR][1000 genomes]
rs1527473	0.92[YRI][hapmap];0.83[AFR][1000 genomes]
rs1527474	0.87[AFR][1000 genomes]
rs1609151	0.94[AFR][1000 genomes]
rs1852539	0.85[AFR][1000 genomes]
rs1918371	0.87[AFR][1000 genomes]
rs1918372	0.89[AFR][1000 genomes]
rs1918373	0.87[AFR][1000 genomes]
rs1918374	0.90[AFR][1000 genomes]
rs1918375	0.91[AFR][1000 genomes]
rs1949970	0.85[AFR][1000 genomes]
rs6467337	0.86[AFR][1000 genomes]
rs6467363	0.88[AFR][1000 genomes]
rs6467371	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs6958863	0.86[AFR][1000 genomes]
rs6963015	0.86[AFR][1000 genomes]
rs6969280	0.84[AFR][1000 genomes]
rs9641897	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80355400-80365800	Weak transcription	HSMM	muscle
2	chr7:80359200-80369000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:80359400-80365800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr7:80359400-80369600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:80359400-80370200	Weak transcription	NHLF	lung
6	chr7:80359400-80378000	Weak transcription	Psoas Muscle	Psoas
7	chr7:80359600-80373800	Weak transcription	Fetal Muscle Leg	muscle
8	chr7:80360600-80377800	Weak transcription	Left Ventricle	heart
9	chr7:80361400-80373600	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr7:80363600-80385200	Weak transcription	Fetal Stomach	stomach
11	chr7:80365200-80366200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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