Variant report

Variant	rs6958863
Chromosome Location	chr7:80339902-80339903
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10499863	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10808255	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11770916	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12670520	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1358338	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1358339	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1405746	0.88[AFR][1000 genomes]
rs1527466	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1527469	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1527471	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1527473	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1527474	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1609151	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1609152	0.86[AFR][1000 genomes]
rs1852539	0.85[AFR][1000 genomes]
rs1918371	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1918372	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1918373	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1918374	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1918375	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1949970	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2222713	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2366858	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2886791	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6467337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6467363	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6467371	0.82[YRI][hapmap]
rs6958853	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6963015	1.00[AFR][1000 genomes]
rs6969280	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9641897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv888526	chr7:80240943-80354229	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80333000-80340600	Weak transcription	Osteobl	bone
2	chr7:80336800-80340800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr7:80337200-80340400	Weak transcription	NHDF-Ad	bronchial
4	chr7:80337200-80340800	Weak transcription	NHLF	lung
5	chr7:80337200-80341200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:80338400-80340200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:80339800-80340800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr7:80339800-80341000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:80339800-80341000	Weak transcription	Primary monocytes fromperipheralblood	blood

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