Variant report

Variant	rs1582897
Chromosome Location	chr5:68110727-68110728
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10039488	0.82[EUR][1000 genomes]
rs10039512	0.85[EUR][1000 genomes]
rs10056434	0.81[EUR][1000 genomes]
rs10067045	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs10076002	0.88[CEU][hapmap]
rs10076159	0.84[CEU][hapmap]
rs10077547	0.80[EUR][1000 genomes]
rs10471758	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs10940179	0.81[EUR][1000 genomes]
rs10940180	0.80[EUR][1000 genomes]
rs10940181	0.80[EUR][1000 genomes]
rs10940182	0.81[EUR][1000 genomes]
rs12153013	0.82[EUR][1000 genomes]
rs12234010	0.83[EUR][1000 genomes]
rs1427906	0.86[EUR][1000 genomes]
rs1427907	0.89[EUR][1000 genomes]
rs1820643	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2888407	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2913280	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2913285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2913286	0.87[EUR][1000 genomes]
rs2913287	0.86[EUR][1000 genomes]
rs2913288	0.86[EUR][1000 genomes]
rs2913289	0.85[EUR][1000 genomes]
rs2913290	0.82[EUR][1000 genomes]
rs2913291	0.85[EUR][1000 genomes]
rs2913292	0.85[EUR][1000 genomes]
rs2913293	0.85[EUR][1000 genomes]
rs2913294	0.85[EUR][1000 genomes]
rs2972421	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2972426	0.86[EUR][1000 genomes]
rs2972427	0.86[EUR][1000 genomes]
rs2972428	0.85[EUR][1000 genomes]
rs3097142	0.85[EUR][1000 genomes]
rs3112432	0.85[EUR][1000 genomes]
rs36103925	0.84[EUR][1000 genomes]
rs4246758	0.84[EUR][1000 genomes]
rs4626296	0.86[EUR][1000 genomes]
rs6877035	0.80[CEU][hapmap];0.81[EUR][1000 genomes]
rs7702480	0.85[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1582897	PIK3R1	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68110200-68111000	Enhancers	H9 Cell Line	embryonic stem cell
2	chr5:68110400-68111200	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr5:68110400-68111200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr5:68110600-68111000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr5:68110600-68111000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr5:68110600-68111200	Enhancers	H1 Cell Line	embryonic stem cell

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