Variant report

Variant	rs12153013
Chromosome Location	chr5:68158818-68158819
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10039488	0.91[EUR][1000 genomes]
rs10039512	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10041293	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10056434	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10056855	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10067045	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10076002	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap]
rs10076159	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10077547	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10471758	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10940179	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10940180	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10940181	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10940182	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12234010	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13165901	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1427906	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1427907	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1582897	0.82[EUR][1000 genomes]
rs1820643	0.82[EUR][1000 genomes]
rs2888407	0.82[EUR][1000 genomes]
rs2913280	0.81[EUR][1000 genomes]
rs2913285	0.82[EUR][1000 genomes]
rs2913286	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2913287	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2913288	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2913289	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2913290	0.91[EUR][1000 genomes]
rs2913291	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2913292	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2913293	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2913294	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2972421	0.82[EUR][1000 genomes]
rs2972426	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2972427	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2972428	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3097142	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3112432	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4246758	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4246760	0.88[EUR][1000 genomes]
rs4280829	0.88[EUR][1000 genomes]
rs4418057	0.84[EUR][1000 genomes]
rs4541611	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4626296	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4976051	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6869950	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6877035	0.92[CEU][hapmap];0.93[EUR][1000 genomes]
rs6887308	0.92[CEU][hapmap]
rs7702480	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7715545	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7737876	0.88[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12153013	PIK3R1	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68158800-68161200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links