Variant report

Variant	rs4976051
Chromosome Location	chr5:68171562-68171563
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10039488	0.87[EUR][1000 genomes]
rs10039512	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10041293	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10056434	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10056855	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10067045	0.96[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10076002	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap]
rs10076159	0.96[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap]
rs10077547	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10471758	0.96[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10940179	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10940180	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10940181	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10940182	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12153013	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12234010	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13165901	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1427906	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1427907	0.88[EUR][1000 genomes]
rs2913286	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2913287	0.90[EUR][1000 genomes]
rs2913288	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2913289	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2913290	0.87[EUR][1000 genomes]
rs2913291	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2913292	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2913293	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2913294	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2972426	0.90[EUR][1000 genomes]
rs2972427	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2972428	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3097142	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3112432	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4246758	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4246760	0.92[EUR][1000 genomes]
rs4280829	0.93[EUR][1000 genomes]
rs4418057	0.89[EUR][1000 genomes]
rs4541611	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4626296	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6869950	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6877035	0.92[CEU][hapmap];0.86[YRI][hapmap];0.89[EUR][1000 genomes]
rs6887308	0.92[CEU][hapmap];0.85[YRI][hapmap]
rs7702480	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7715545	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7737876	0.93[EUR][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68170400-68172000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr5:68170400-68172200	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr5:68170400-68172400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr5:68170600-68172200	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr5:68170600-68172400	Enhancers	Primary T cells from cord blood	blood
6	chr5:68170600-68172400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr5:68170800-68172000	Enhancers	Primary T cells fromperipheralblood	blood
8	chr5:68170800-68172000	Enhancers	Fetal Thymus	thymus
9	chr5:68171000-68171600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr5:68171000-68172200	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr5:68171200-68172000	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr5:68171400-68171800	Enhancers	Dnd41	blood

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