Variant report

Variant	rs4246760
Chromosome Location	chr5:68178407-68178408
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:68174097..68175600-chr5:68177826..68180032,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10039488	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10039512	0.85[EUR][1000 genomes]
rs10041293	0.92[EUR][1000 genomes]
rs10056434	0.90[EUR][1000 genomes]
rs10056855	0.95[EUR][1000 genomes]
rs10067045	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs10076002	0.92[CEU][hapmap];0.90[TSI][hapmap]
rs10076159	0.88[CEU][hapmap]
rs10077547	0.89[EUR][1000 genomes]
rs10471758	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs10940179	0.88[EUR][1000 genomes]
rs10940180	0.89[EUR][1000 genomes]
rs10940181	0.89[EUR][1000 genomes]
rs10940182	0.89[EUR][1000 genomes]
rs12153013	0.88[EUR][1000 genomes]
rs12234010	0.86[EUR][1000 genomes]
rs13165901	0.92[EUR][1000 genomes]
rs1427906	0.84[EUR][1000 genomes]
rs1427907	0.82[EUR][1000 genomes]
rs2913286	0.83[EUR][1000 genomes]
rs2913287	0.85[EUR][1000 genomes]
rs2913288	0.84[EUR][1000 genomes]
rs2913289	0.85[EUR][1000 genomes]
rs2913290	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2913291	0.85[EUR][1000 genomes]
rs2913292	0.85[EUR][1000 genomes]
rs2913293	0.85[EUR][1000 genomes]
rs2913294	0.85[EUR][1000 genomes]
rs2972426	0.85[EUR][1000 genomes]
rs2972427	0.84[EUR][1000 genomes]
rs2972428	0.85[EUR][1000 genomes]
rs3097142	0.85[EUR][1000 genomes]
rs3112432	0.85[EUR][1000 genomes]
rs4246758	0.83[EUR][1000 genomes]
rs4280829	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4418057	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4541611	0.92[EUR][1000 genomes]
rs4626296	0.85[EUR][1000 genomes]
rs4976051	0.92[EUR][1000 genomes]
rs6869950	0.91[EUR][1000 genomes]
rs6877035	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6887308	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs7702480	0.85[EUR][1000 genomes]
rs7715545	0.91[EUR][1000 genomes]
rs7737876	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4246760	PIK3R1	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68176800-68182400	Weak transcription	NHDF-Ad	bronchial
2	chr5:68177000-68179000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr5:68178200-68180600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr5:68178200-68181000	Enhancers	Primary T helper cells PMA-I stimulated	--

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