Variant report

Variant	rs12234010
Chromosome Location	chr5:68145659-68145660
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:68144075..68146738-chr5:68150083..68152824,2	K562	blood:
2	chr5:68143627..68146263-chr5:68146976..68149088,2	K562	blood:
3	chr5:68144763..68146279-chr5:68146550..68148476,2	K562	blood:

Variant related genes	Relation type
ENSG00000250289	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10039488	0.93[EUR][1000 genomes]
rs10039512	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10041293	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10056434	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10056855	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10067045	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10077547	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10471758	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10940179	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10940180	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10940181	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10940182	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12153013	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13165901	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1427906	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1427907	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1582897	0.83[EUR][1000 genomes]
rs1820643	0.83[EUR][1000 genomes]
rs2888407	0.84[EUR][1000 genomes]
rs2913280	0.82[EUR][1000 genomes]
rs2913285	0.83[EUR][1000 genomes]
rs2913286	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2913287	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2913288	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2913289	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2913290	0.93[EUR][1000 genomes]
rs2913291	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2913292	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2913293	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2913294	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2972421	0.84[EUR][1000 genomes]
rs2972426	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2972427	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2972428	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3097142	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3112432	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4246758	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4246760	0.86[EUR][1000 genomes]
rs4280829	0.86[EUR][1000 genomes]
rs4418057	0.83[EUR][1000 genomes]
rs4541611	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4626296	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4976051	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6869950	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6877035	0.95[EUR][1000 genomes]
rs7702480	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7715545	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7737876	0.87[EUR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68143600-68146000	Enhancers	NHDF-Ad	bronchial
2	chr5:68143800-68146000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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