Variant report

Variant	rs2913290
Chromosome Location	chr5:68135260-68135261
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:68119122..68120886-chr5:68132781..68135683,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10039488	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10039512	0.96[EUR][1000 genomes]
rs10041293	0.82[EUR][1000 genomes]
rs10056434	0.91[EUR][1000 genomes]
rs10056855	0.84[EUR][1000 genomes]
rs10067045	0.82[CEU][hapmap];0.93[EUR][1000 genomes]
rs10076002	0.86[CEU][hapmap]
rs10076159	0.82[CEU][hapmap]
rs10077547	0.89[EUR][1000 genomes]
rs10471758	0.82[CEU][hapmap];0.93[EUR][1000 genomes]
rs10940179	0.92[EUR][1000 genomes]
rs10940180	0.90[EUR][1000 genomes]
rs10940181	0.90[EUR][1000 genomes]
rs10940182	0.91[EUR][1000 genomes]
rs12153013	0.91[EUR][1000 genomes]
rs12234010	0.93[EUR][1000 genomes]
rs13165901	0.88[EUR][1000 genomes]
rs1427906	0.95[EUR][1000 genomes]
rs1427907	0.92[EUR][1000 genomes]
rs1582897	0.82[EUR][1000 genomes]
rs1820643	0.82[EUR][1000 genomes]
rs2888407	0.87[EUR][1000 genomes]
rs2913280	0.86[EUR][1000 genomes]
rs2913285	0.82[EUR][1000 genomes]
rs2913286	0.94[EUR][1000 genomes]
rs2913287	0.95[EUR][1000 genomes]
rs2913288	0.95[EUR][1000 genomes]
rs2913289	0.96[EUR][1000 genomes]
rs2913291	0.96[EUR][1000 genomes]
rs2913292	0.96[EUR][1000 genomes]
rs2913293	0.96[EUR][1000 genomes]
rs2913294	0.96[EUR][1000 genomes]
rs2972421	0.87[EUR][1000 genomes]
rs2972426	0.95[EUR][1000 genomes]
rs2972427	0.95[EUR][1000 genomes]
rs2972428	0.96[EUR][1000 genomes]
rs3097142	0.96[EUR][1000 genomes]
rs3112432	0.96[EUR][1000 genomes]
rs4246758	0.94[EUR][1000 genomes]
rs4246760	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4280829	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4418057	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4541611	0.83[EUR][1000 genomes]
rs4626296	0.95[EUR][1000 genomes]
rs4976051	0.87[EUR][1000 genomes]
rs6869950	0.80[EUR][1000 genomes]
rs6877035	0.95[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6887308	0.95[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7702480	0.96[EUR][1000 genomes]
rs7715545	0.81[EUR][1000 genomes]
rs7737876	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv328643	chr5:68134744-68139215	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68133000-68142800	Weak transcription	Aorta	Aorta
2	chr5:68133600-68136800	Enhancers	Placenta Amnion	Placenta Amnion
3	chr5:68134000-68135600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr5:68134000-68135600	Enhancers	NHDF-Ad	bronchial
5	chr5:68134200-68135400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr5:68134200-68135400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr5:68134200-68135400	Enhancers	Placenta	Placenta
8	chr5:68134200-68135400	Enhancers	HMEC	breast
9	chr5:68134200-68135600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr5:68134200-68135800	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr5:68134800-68135400	Enhancers	NHEK	skin
12	chr5:68134800-68135800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr5:68134800-68136000	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr5:68135200-68135400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr5:68135200-68135600	Enhancers	Adipose Nuclei	Adipose
16	chr5:68135200-68139200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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