Variant report

Variant	rs7715545
Chromosome Location	chr5:68187902-68187903
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10039488	0.81[EUR][1000 genomes]
rs10039512	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10041293	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10056434	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10056855	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10067045	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10077547	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10471758	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10940179	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10940180	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10940181	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10940182	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12153013	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12234010	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13165901	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1427906	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1427907	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2913286	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2913287	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2913288	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2913289	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2913290	0.81[EUR][1000 genomes]
rs2913291	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2913292	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2913293	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2913294	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2972426	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2972427	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2972428	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3097142	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3112432	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4246758	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4246760	0.91[EUR][1000 genomes]
rs4280829	0.92[EUR][1000 genomes]
rs4418057	0.88[EUR][1000 genomes]
rs4541611	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4626296	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4976051	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6869950	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6877035	0.83[EUR][1000 genomes]
rs7702480	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7737876	0.91[EUR][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68179600-68195200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr5:68180200-68190400	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr5:68187000-68188600	Enhancers	Primary T cells from cord blood	blood
4	chr5:68187200-68188000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr5:68187200-68188200	Enhancers	Fetal Thymus	thymus
6	chr5:68187400-68188600	Enhancers	GM12878-XiMat	blood
7	chr5:68187600-68188000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr5:68187600-68190600	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr5:68187800-68188000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr5:68187800-68188000	Enhancers	Dnd41	blood

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