Variant report

Variant	rs2888407
Chromosome Location	chr5:68114726-68114727
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10039488	0.87[EUR][1000 genomes]
rs10039512	0.86[EUR][1000 genomes]
rs10056434	0.82[EUR][1000 genomes]
rs10067045	0.84[EUR][1000 genomes]
rs10076002	0.81[CEU][hapmap];0.85[TSI][hapmap]
rs10077547	0.81[EUR][1000 genomes]
rs10471758	0.84[EUR][1000 genomes]
rs10940179	0.82[EUR][1000 genomes]
rs10940180	0.81[EUR][1000 genomes]
rs10940181	0.81[EUR][1000 genomes]
rs10940182	0.81[EUR][1000 genomes]
rs12153013	0.82[EUR][1000 genomes]
rs12234010	0.84[EUR][1000 genomes]
rs1427906	0.86[EUR][1000 genomes]
rs1427907	0.88[EUR][1000 genomes]
rs1582897	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1820643	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2913280	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2913285	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2913286	0.86[EUR][1000 genomes]
rs2913287	0.87[EUR][1000 genomes]
rs2913288	0.86[EUR][1000 genomes]
rs2913289	0.86[EUR][1000 genomes]
rs2913290	0.87[EUR][1000 genomes]
rs2913291	0.86[EUR][1000 genomes]
rs2913292	0.86[EUR][1000 genomes]
rs2913293	0.86[EUR][1000 genomes]
rs2913294	0.86[EUR][1000 genomes]
rs2972421	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2972426	0.87[EUR][1000 genomes]
rs2972427	0.86[EUR][1000 genomes]
rs2972428	0.86[EUR][1000 genomes]
rs3097142	0.86[EUR][1000 genomes]
rs3112432	0.86[EUR][1000 genomes]
rs4246758	0.84[EUR][1000 genomes]
rs4626296	0.87[EUR][1000 genomes]
rs6877035	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs6887308	0.87[CEU][hapmap]
rs7702480	0.86[EUR][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68113000-68114800	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr5:68113000-68115200	Enhancers	Fetal Brain Male	brain
3	chr5:68113200-68115000	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr5:68113200-68115200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr5:68113400-68114800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr5:68113400-68115000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr5:68113400-68115200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr5:68113400-68115200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
9	chr5:68113400-68115600	Enhancers	Brain Substantia Nigra	brain
10	chr5:68113600-68114800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr5:68113600-68114800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr5:68113600-68115000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr5:68113600-68115200	Enhancers	H1 Cell Line	embryonic stem cell
14	chr5:68113600-68115200	Enhancers	Brain Angular Gyrus	brain
15	chr5:68113800-68114800	Flanking Active TSS	Brain Anterior Caudate	brain
16	chr5:68113800-68114800	Flanking Active TSS	Brain Cingulate Gyrus	brain
17	chr5:68113800-68114800	Enhancers	Brain Germinal Matrix	brain
18	chr5:68113800-68114800	Enhancers	Fetal Lung	lung
19	chr5:68113800-68114800	Enhancers	NHDF-Ad	bronchial
20	chr5:68113800-68115200	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr5:68113800-68115400	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr5:68114000-68114800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr5:68114600-68114800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr5:68114600-68114800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
25	chr5:68114600-68115200	Enhancers	Fetal Brain Female	brain
26	chr5:68114600-68115600	Enhancers	Brain Hippocampus Middle	brain
27	chr5:68114600-68117400	Enhancers	Brain Inferior Temporal Lobe	brain

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