Variant report

Variant	rs159807
Chromosome Location	chr5:151418072-151418073
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs150566	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs153528	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs154683	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs159805	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs159806	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs159810	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs159811	0.85[AFR][1000 genomes]
rs159813	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs159930	0.84[AFR][1000 genomes]
rs159931	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs159933	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs255486	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs29657	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs29658	0.82[AFR][1000 genomes]
rs29667	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs302389	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs39786	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs707165	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020899	chr5:151412785-151516788	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151417800-151418400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
2	chr5:151417800-151419400	Enhancers	Primary T cells fromperipheralblood	blood
3	chr5:151417800-151419400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr5:151417800-151419400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr5:151417800-151419400	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr5:151417800-151419600	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr5:151417800-151419800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr5:151417800-151419800	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr5:151417800-151420000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr5:151418000-151419200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr5:151418000-151419400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr5:151418000-151419800	Enhancers	Primary T helper naive cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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