Variant report

Variant	rs1651080
Chromosome Location	chr3:159727990-159727991
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs13061089	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1651079	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2647926	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2647927	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2647938	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2914117	0.85[EUR][1000 genomes]
rs2936300	0.86[EUR][1000 genomes]
rs2936301	0.86[EUR][1000 genomes]
rs505190	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs507822	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs507927	0.86[EUR][1000 genomes]
rs589017	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs598638	0.84[AMR][1000 genomes]
rs600614	0.86[EUR][1000 genomes]
rs635602	0.87[EUR][1000 genomes]
rs638274	0.86[EUR][1000 genomes]
rs659596	0.81[EUR][1000 genomes]
rs670705	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6778021	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829769	chr3:159606913-159805282	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	esv1806743	chr3:159723529-159744022	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159712000-159729600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr3:159713000-159734800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr3:159721000-159730000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr3:159724800-159729800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr3:159724800-159729800	Weak transcription	Osteobl	bone
6	chr3:159725000-159728600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr3:159725000-159729000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr3:159726600-159731000	Enhancers	Primary B cells from peripheral blood	blood
9	chr3:159727800-159728400	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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