Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs13061089	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1651080	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2647926	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2647927	0.85[EUR][1000 genomes]
rs2647938	0.89[EUR][1000 genomes]
rs2914117	0.89[EUR][1000 genomes]
rs2914118	0.83[EUR][1000 genomes]
rs2936298	0.83[EUR][1000 genomes]
rs2936300	0.89[EUR][1000 genomes]
rs2936301	0.87[EUR][1000 genomes]
rs505190	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs507822	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs507927	0.90[EUR][1000 genomes]
rs589017	0.89[EUR][1000 genomes]
rs598638	0.80[EUR][1000 genomes]
rs600614	0.90[EUR][1000 genomes]
rs635602	0.88[EUR][1000 genomes]
rs638274	0.90[EUR][1000 genomes]
rs659596	0.82[EUR][1000 genomes]
rs670705	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6778021	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829769	chr3:159606913-159805282	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	esv1806743	chr3:159723529-159744022	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159712000-159729600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr3:159713000-159734800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr3:159721000-159730000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr3:159724800-159729800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr3:159724800-159729800	Weak transcription	Osteobl	bone
6	chr3:159725000-159728600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr3:159725000-159729000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr3:159726600-159731000	Enhancers	Primary B cells from peripheral blood	blood
9	chr3:159727800-159728400	Enhancers	GM12878-XiMat	blood

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