Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:159739668..159742959-chr3:159743211..159746773,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000242107	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs13061089	0.93[EUR][1000 genomes]
rs1651079	0.90[EUR][1000 genomes]
rs1651080	0.86[EUR][1000 genomes]
rs2647926	0.95[EUR][1000 genomes]
rs2647927	0.84[EUR][1000 genomes]
rs2647938	0.86[EUR][1000 genomes]
rs2914117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2914118	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2936298	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2936300	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2936301	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs505190	0.93[EUR][1000 genomes]
rs507822	0.95[EUR][1000 genomes]
rs507927	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs589017	0.86[EUR][1000 genomes]
rs635602	0.87[EUR][1000 genomes]
rs638274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs659596	0.83[EUR][1000 genomes]
rs670705	0.93[EUR][1000 genomes]
rs6778021	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829769	chr3:159606913-159805282	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	esv1806743	chr3:159723529-159744022	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159741200-159744000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr3:159741400-159743000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr3:159741600-159744600	Weak transcription	NH-A	brain
4	chr3:159741600-159744600	Weak transcription	NHLF	lung
5	chr3:159741600-159744800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:159741600-159745200	Weak transcription	HMEC	breast
7	chr3:159741800-159743600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr3:159742000-159743000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:159742200-159744400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:159742200-159744400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr3:159742200-159744600	Weak transcription	NHDF-Ad	bronchial

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