Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs13061089	0.85[EUR][1000 genomes]
rs1651079	0.83[EUR][1000 genomes]
rs2647926	0.87[EUR][1000 genomes]
rs2647927	0.91[EUR][1000 genomes]
rs2647938	0.90[EUR][1000 genomes]
rs2914117	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2936298	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2936300	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2936301	0.92[EUR][1000 genomes]
rs505190	0.85[EUR][1000 genomes]
rs507822	0.87[EUR][1000 genomes]
rs507927	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs589017	0.90[EUR][1000 genomes]
rs598638	0.81[EUR][1000 genomes]
rs600614	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs635602	0.91[EUR][1000 genomes]
rs638274	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs659596	0.90[EUR][1000 genomes]
rs670705	0.85[EUR][1000 genomes]
rs6778021	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9968095	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829769	chr3:159606913-159805282	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159741600-159744600	Weak transcription	NH-A	brain
2	chr3:159741600-159744600	Weak transcription	NHLF	lung
3	chr3:159741600-159744800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:159741600-159745200	Weak transcription	HMEC	breast
5	chr3:159742200-159744400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:159742200-159744400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr3:159742200-159744600	Weak transcription	NHDF-Ad	bronchial
8	chr3:159743000-159744600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:159743000-159744800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr3:159743600-159745400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr3:159743600-159747400	Enhancers	Primary hematopoietic stem cells	blood
12	chr3:159744000-159747000	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr3:159744000-159756200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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