Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:159749978..159750722-chr3:159851261..159852103,2	MCF-7	breast:
2	chr3:159749714..159750633-chr3:160060645..160061538,4	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs13061089	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1651079	0.82[EUR][1000 genomes]
rs1651080	0.81[EUR][1000 genomes]
rs2647926	0.86[EUR][1000 genomes]
rs2647927	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2647938	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2914117	0.84[EUR][1000 genomes]
rs2914118	0.90[EUR][1000 genomes]
rs2936298	0.90[EUR][1000 genomes]
rs2936300	0.83[EUR][1000 genomes]
rs2936301	0.86[EUR][1000 genomes]
rs505190	0.85[EUR][1000 genomes]
rs507822	0.86[EUR][1000 genomes]
rs507927	0.83[EUR][1000 genomes]
rs589017	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs598638	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs600614	0.83[EUR][1000 genomes]
rs635602	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs638274	0.83[EUR][1000 genomes]
rs670705	0.84[EUR][1000 genomes]
rs6778021	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829769	chr3:159606913-159805282	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159744000-159756200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:159746400-159750200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr3:159746400-159750200	Weak transcription	NHLF	lung
4	chr3:159747000-159756600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr3:159749400-159750800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:159749600-159750200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr3:159750000-159750200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:159750000-159750200	Enhancers	GM12878-XiMat	blood
9	chr3:159750000-159750800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr3:159750000-159752000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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