Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:159744316-159744688	MCF-7	breast:	n/a	n/a
2	POLR2A	chr3:159744333-159744651	MCF-7	breast:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CTD-2049J23.3.1-1	chr3:159744397-159744673	NR_104132

Variant related genes	Relation type
LINC01100	TF binding region

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs13061089	0.93[EUR][1000 genomes]
rs1651079	0.87[EUR][1000 genomes]
rs1651080	0.86[EUR][1000 genomes]
rs2647926	0.91[EUR][1000 genomes]
rs2647927	0.87[EUR][1000 genomes]
rs2647938	0.85[EUR][1000 genomes]
rs2914117	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2914118	0.92[EUR][1000 genomes]
rs2936298	0.92[EUR][1000 genomes]
rs2936300	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs505190	0.90[EUR][1000 genomes]
rs507822	0.91[EUR][1000 genomes]
rs507927	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs589017	0.85[EUR][1000 genomes]
rs600614	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs635602	0.87[EUR][1000 genomes]
rs638274	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs659596	0.86[EUR][1000 genomes]
rs670705	0.90[EUR][1000 genomes]
rs6778021	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829769	chr3:159606913-159805282	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159741600-159744600	Weak transcription	NH-A	brain
2	chr3:159741600-159744600	Weak transcription	NHLF	lung
3	chr3:159741600-159744800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:159741600-159745200	Weak transcription	HMEC	breast
5	chr3:159742200-159744600	Weak transcription	NHDF-Ad	bronchial
6	chr3:159743000-159744600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr3:159743000-159744800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr3:159743600-159745400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr3:159743600-159747400	Enhancers	Primary hematopoietic stem cells	blood
10	chr3:159744000-159747000	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr3:159744000-159756200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr3:159744200-159744600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr3:159744200-159744800	Enhancers	GM12878-XiMat	blood
14	chr3:159744200-159745600	Enhancers	Esophagus	oesophagus
15	chr3:159744400-159745000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:159744400-159746000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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