Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MTA3	chr3:159728244-159729292	GM12878	blood:	n/a	n/a
2	EBF1	chr3:159729131-159729411	GM12878	blood:	n/a	chr3:159729250-159729261
3	POLR2A	chr3:159728317-159729378	GM12891	blood:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-432B6.3.1-1	chr3:159729253-159729338	ENSG00000244040

Variant related genes	Relation type
LINC01100	TF binding region

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs13061089	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1651079	0.89[EUR][1000 genomes]
rs1651080	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2279742	0.85[CEU][hapmap]
rs2647926	0.89[CEU][hapmap];0.91[EUR][1000 genomes]
rs2647927	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2914117	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs2914118	0.90[EUR][1000 genomes]
rs2914119	0.82[CEU][hapmap]
rs2936298	0.87[CEU][hapmap];0.90[EUR][1000 genomes]
rs2936300	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs2936301	0.85[EUR][1000 genomes]
rs505190	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs507822	0.91[EUR][1000 genomes]
rs507927	0.86[EUR][1000 genomes]
rs589017	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs598638	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs600614	0.86[EUR][1000 genomes]
rs635602	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs638274	0.90[CEU][hapmap];0.86[EUR][1000 genomes]
rs659596	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs670705	0.85[CEU][hapmap];0.92[EUR][1000 genomes]
rs6778021	0.89[CEU][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829769	chr3:159606913-159805282	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	esv1806743	chr3:159723529-159744022	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159712000-159729600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr3:159713000-159734800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr3:159721000-159730000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr3:159724800-159729800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr3:159724800-159729800	Weak transcription	Osteobl	bone
6	chr3:159726600-159731000	Enhancers	Primary B cells from peripheral blood	blood
7	chr3:159728600-159729800	Enhancers	Primary B cells from cord blood	blood
8	chr3:159728600-159730800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr3:159729000-159729400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr3:159729000-159730000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr3:159729200-159729600	Enhancers	GM12878-XiMat	blood
12	chr3:159729200-159729600	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr3:159729200-159730200	Weak transcription	Duodenum Mucosa	Duodenum
14	chr3:159729200-159740800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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